PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G182400.1.p
Common NameGLYMA_12G182400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 253aa    MW: 28071.7 Da    PI: 8.4636
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G182400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.8e-1776126155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+GVr++   +rWv+e+r+p   +k+ r++lg++ t+e+Aa+a++ a ++l+g
  Glyma.12G182400.1.p  76 PVYRGVRQRN-GNRWVCEVREP---NKKSRIWLGTYPTPEMAARAHDVAVLALKG 126
                          68*****999.9******9998...347**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-1276126IPR001471AP2/ERF domain
PROSITE profilePS5103221.49677134IPR001471AP2/ERF domain
SMARTSM003802.8E-2677140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-2977136IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2077136IPR016177DNA-binding domain
CDDcd000188.64E-2778136No hitNo description
PRINTSPR003672.2E-77889IPR001471AP2/ERF domain
PRINTSPR003672.2E-7100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MDVKMNKVES ESPYYNYSSS SPSSTSSQSQ LSLAFACNPN FSPDHSSLHA ETWKAGVLIS  60
HKRKAGRKKF RETRHPVYRG VRQRNGNRWV CEVREPNKKS RIWLGTYPTP EMAARAHDVA  120
VLALKGTSAL FNFPDSVSLL PVAKSSSAAD VRVAASKVST IFCPSYSSVT LSSSSPSNSR  180
VKAKPCLIDD FVKTENNVDE AKSVFFDEEA FYNMPLLLDS MAEGLLITPP SMKRVFDWDQ  240
VDCEIDLTLW TD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-88AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014620327.10.0PREDICTED: ethylene-responsive transcription factor ERF024-like
SwissprotA2WZI42e-54DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z52e-54DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLK7LVP10.0K7LVP1_SOYBN; Uncharacterized protein
STRINGGLYMA12G30740.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.11e-46C-repeat/DRE binding factor 2